Due to the large amount of topics covered and their multidisciplinary nature, it is strongly advised that the student reads the recommended chapters or sections before the class. These will be provided at least one week in advance.
1) Lectures: During the lectures the proposed topic will be presented, always encouraging discussion.
2) Discussion Sessions: When the topic allows it, discussion sessions will be held to solve particular problems related to the current topic with the main idea of understanding the system and developing different strategies to solve it, underlining the fact that there are almost always different approaches to the same problem.
3) Biomedical Project. In individual groups the students will develop the project for a technology based company for biomedical applications which makes use of biomedical imaging approaches.
4) Oral Presentations: At least once during the course each student will have the chance to do a short oral presentation on a topic related to the Biomedical Project chosen. These oral presentations will have a duration of approx. 10-20 minutes per student.
Recommended research papers will have to be studied prior to each other's student oral presentation. Data analysis and representation for the laboratory sessions will need good skills in matlab/octave.
Each experiment will be performed in individual groups. During these sessions simple experiments will be done to understand the basics of light transport in tissues, and how scattering affects image quality in microscopy, with emphasis on 3D microscopy. The main goal during these sessions is to understand the physics behind the experiment and how it relates to the theory we presented during the lectures, to obtain rigorous experimental data, and to have a clear understanding on the basis of image formation. Different software for 3D data analysis will be used, mostly Matlab (or Octave) and ImageJ.